CMB/BMP 450/550 Virtual Server Setup
Connect
Setup Conda
wget https://repo.anaconda.com/archive/Anaconda3-2024.06-1-Linux-x86_64.sh
chmod 755 Anaconda3-2024.06-1-Linux-x86_64.sh
./Anaconda3-2024.06-1-Linux-x86_64.sh
Welcome to Anaconda3 2024.06-1
In order to continue the installation process, please review the license
agreement.
Please, press ENTER to continue
>>> (press ENTER)
...
Do you accept the license terms? [yes|no]
>>> yes
...
Anaconda3 will now be installed into this location:
/home/cshen/anaconda3
- Press ENTER to confirm the location
- Press CTRL-C to abort the installation
- Or specify a different location below
[/home/cshen/anaconda3] >>> (press ENTER)
...
*** AT COMPLETION, DISCONNECT AND CONNECT TO CONTINUE WITH BELOW ***
Install Packages (all except qiime)
conda config --add channels bioconda
conda config --add channels conda-forge
conda update conda -y
conda update conda-build -y
conda install conda-libmamba-solver -y
conda config --set solver libmamba
conda install blast hmmer fastqc trimmomatic bowtie2 raxml dfast megahit muscle prodigal -y
Channels:
- conda-forge
- bioconda
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: \
Install Packages (qiime)
conda env create -n qiime2-tiny-2024.5 --file https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
*** TO USE QIIME ***
conda activate qiime2-tiny-2024.5
*** TO SWITCH BACK TO BASE ENVIRONMENT FOR ALL OTHER PACKAGES ***
conda deactivate
